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Import Affymetrix microRNA and miRNA data
Question
ID
72
Category
Qlucore Omics Explorer
  Data Import
Date Created
2012-08-23 13:12:36
Date Updated
2013-06-14 12:33:42
How do I import Affymetrix microRNA and miRNA data?
Answer
One possible way is to use the free Affymetrix miRNA tool or the Affymetrix Expression Console (file version 2.0 and onwards) and export normalized data as a text file. The text file can then be imported using the Wizard in Qlucore, see How to import data (Affymetrix, Illumina, Agilent, Wizard, tab separated, csv, txt, RNA-seq, bam).
In the cases the exported normalized data file includes annotations also "to the right" of the measurement data a second import step is required in Qlucore. First import all annotations to the left of the measurement data and the measurement data (exclude non data columns such as p-value) using the Wizard (You find the wizard by using File and the Open in Qlucore and then select the file you shall import). Then as a second step import the normalized data file again using the menu File | Import | Variable annotations. Select that variable annotations that you would like to add and you have a fully populated data file imported into Qlucore.
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