 | | Analyzing Flow Cytometry data | | | Question | | | Can I analyze Flow Cytometry data with Qlucore Omics Explorer. | | Answer | Yes, example on data import analysis steps are given in this document. How to work with flow cytometry data E.pdf.
A more advanced example including the use of automatic gating is provided in this document. How to work with flow cytometry data - example D.pdf
For the examples these files are required:
AML sample annotations n100 LMD ID.csv
AMLdownload.R
AMLfingerprint.R | | Related articles | - Convert from R to Qlucore data file format
- How to import data (RNA-seq, Illumina, Affymetrix, 10x, Agilent, Wizard, tab separated, csv, txt, bam)
- Import Affymetrix data
- Import annotations
- Normalization of imported RNA-seq data
- Save RNA-seq or Affymetrix files as .gedata
- Supported data types
- Two colored arrays
- Analyze data from Array Express
- Anova in Qlucore
- Computation of R/R2 statistics
- Data with many samples
- Extended statistics and R
- File extensions
- Gene lengths for count data
- How To Import TCGA Data
- Loading and creating annotations
- Manual import of data and annotations from GEO
- Multi group comparison and ANOVA
- Normalize RNA-seq data in R
- Open interface to R (API)
- Statistical tests for the Extended option using the Open R API: Welch, Wilcoxon, Limma, Mann-Whitney
- Use .sra files
- Using Limma and Extended Statistics
- What data is used in the Two group comparison (t-test)
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